
Package index
-
inv_powerlaw()
neg_expo()
- Dispersal kernels
-
GeoModel-class
.model_ob
- GeoModel class
-
`habitat_density<-`(<GeoNetwork>)
- GeoNetwork
-
GeoRasters-class
.rast_ro
- GeoRaster class
-
GlobalRast-class
.grast_ro
- GlobalRast class
-
setmaps()
- Gmap class
-
RiskMap-class
- RiskMap class
-
connectivity()
- Calculate and plot maps of habitat connectivity
-
dist_methods()
- Distance methods supported
-
.indices()
- Internal function to extract risk indices from a list of crop rasters.
-
geoscale_param()
- Get geographical scales from the parameters
-
get_parameters()
- Get Parameters
-
get_rasters()
- Get rasters object from parameters See host object in
get_parameters()
orload_parameters()
.
-
global_scales()
- Global geographical extent
-
gplot()
- Plot a Raster* object
-
`habitat_density<-`()
- Set the habitat density.
-
hci_diff()
- Calculate difference map
-
hci_mean()
- Calculate mean of habitat connectivity in a region
-
hci_variance()
- Calculate variance of habitat connectivity in a region
-
load_parameters()
- Load Parameters from YAML File
-
ndplot(<GeoNetwork>)
- Network density
-
ndplot()
- Network density plot
-
nn_sum()
node_strength()
betweeness()
ev()
degree()
closeness()
pagerank()
- Calculation on network metrics a.k.a centralities.
-
reset_params()
- Reset parameters.yaml
-
reso()
- Get resolution value
-
risk_indices()
- Get risk indices
-
sa_onrasters()
msean_onrast()
- Run sensitivity analysis
-
sensitivity_analysis()
- Sensitivity analysis for habitat connectivity
-
set_global_scales()
- Set global geographical extent
-
set_parameters()
- Set Parameters
-
setmaps(<Gmap>)
- Sets the map slots in the Gmap object.
-
setprops(<GeoModel>,<character>,<numeric>,<numeric>)
- Set properties of the GeoModel object.
-
setprops()
- Set properties of the GeoModel object.
-
supported_metrics()
- Returns metrics currently supported in the analysis.