Function reference • geohabnet

All functions

inv_powerlaw() neg_expo(): Dispersal kernels

GeoModel-class .model_ob: GeoModel class

`host_density<-`(<GeoNetwork>): GeoNetwork

GeoRasters-class .rast_ro: GeoRaster class

GlobalRast-class .grast_ro: GlobalRast class

setmaps(): Gmap class

RiskMap-class: RiskMap class

connectivity(): Calculate and plot maps

cropharvest_rast(): Get raster object for crop

crops_rast(): Get sum of rasters for individual crops

dist_methods(): Distance methods supported

.indices(): Internal function to extract risk indices from a list of crop rasters.

geoscale_param(): Get geographical scales from the parameters

get_parameters(): Get Parameters

get_rasters(): Get rasters object from parameters

global_scales(): Global geographical extent

gplot(): Plot a Raster* object

hci_diff(): Calculate difference map

hci_mean(): Calculate mean of raster objects

hci_variance(): Calculate variance of CCRI

`host_density<-`(): Set the host density.

load_parameters(): Load Parameters from YAML File

mapspam(): Supported sources for Mapspam

monfreda(): Supported sources for monfreda

ndplot(<GeoNetwork>): Network density

ndplot(): Network density

nn_sum() node_strength() betweeness() ev() degree() closeness() pagerank(): Calculation on network metrics a.k.a centralities.

reset_params(): Reset parameters.yaml

reso(): Get resolution value

risk_indices(): Get risk indices

sa_onrasters() msean_onrast(): Run sensitivity analysis

sean() msean(): Sensitivity analysis across maps of habitat connectivity

search_crop(): Search for crop

sensitivity_analysis(): Sensitivity analysis for habitat connectivity

set_global_scales(): Set global geographical extent

set_parameters(): Set Parameters

setmaps(<Gmap>): Sets the map slots in the Gmap object.

sp_rast(): Raster for mapspam crop.

supported_metrics(): Returns metrics currently supported in the analysis.

supported_sources(): Get supported sources of crops

tiff_torast(): Get raster object from tif file